C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thioredoxin-like 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145963 Txnl4a-001 ENSMUSG00000057130 10090 + 18:80206795-80223533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000145963
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000145963 12.527±1.80 12.916±5.29 10.951±3.55 11.231±1.85 7.200±0.33 9.641±0.92 12.871±0.60 9.364±0.15 4.316±0.39 13.595±9.82 17.517±6.25 5.513±2.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0002 VISTA 18:80030119-80632361

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0007067 IEA mitotic nuclear division
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269601 TXNL4A-001 protein_coding Homo_sapiens 0 562
ENST00000355491 TXNL4A-008 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000585474 TXNL4A-002 protein_coding Homo_sapiens 0 355
ENST00000585769 TXNL4A-003 nonsense_mediated_decay Homo_sapiens 4e-32 143
ENST00000586295 TXNL4A-005 nonsense_mediated_decay Homo_sapiens 3e-31 139
ENST00000586825 TXNL4A-009 nonsense_mediated_decay Homo_sapiens 2e-32 143
ENST00000591711 TXNL4A-007 protein_coding Homo_sapiens 0 353
ENST00000592837 TXNL4A-012 protein_coding Homo_sapiens 0 355
ENST00000592957 TXNL4A-004 protein_coding Homo_sapiens 0 351

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