C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148247 Csmd2-003 ENSMUSG00000028804 10090 + 4:128477154-128501177 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastKidneyLiverOvaryPlacentaTestisENSMUST00000148247
Transcript ID Adipose Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000148247 0.023±0.00 0.050±0.00 0.010±0.00 0.003±0.00 0.033±0.01 0.018±0.01 0.271±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N2 CIL_0001N2_0002 CGP 4:127987857-128567656

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000241312 CSMD2-001 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000373377 CSMD2-003 protein_coding Homo_sapiens 0 1243
ENST00000373380 CSMD2-002 protein_coding Homo_sapiens 0 1243
ENST00000373381 CSMD2-201 protein_coding Homo_sapiens 0 1243
ENST00000373388 CSMD2-202 protein_coding Homo_sapiens 0 536
ENST00000489419 CSMD2-005 processed_transcript Homo_sapiens 0 243
ENST00000619121 CSMD2-203 protein_coding Homo_sapiens 0 1243

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