C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148460 Bloc1s6-002 ENSMUSG00000005804 10090 + 2:122738519-122748099 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000148460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000148460 11.862±1.98 8.528±1.07 14.978±2.74 16.607±7.53 11.694±2.89 8.628±3.90 11.436±0.72 10.324±1.61 7.776±2.05 9.779±1.81 6.269±1.09 13.631±4.53 7.392±2.82 7.056±3.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QN CIL_0004QN_0003 CGP 2:122681233-122749475
CIL_0004NC CIL_0004NC_0002 CGP 2:122738503-122809569

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220531 BLOC1S6-001 protein_coding Homo_sapiens 0 429
ENST00000358001 RP3-499B10.3-001 processed_pseudogene Homo_sapiens 8e-38 161
ENST00000562384 BLOC1S6-007 protein_coding Homo_sapiens 0 302
ENST00000564310 BLOC1S6-020 nonsense_mediated_decay Homo_sapiens 0 265
ENST00000564765 BLOC1S6-019 protein_coding Homo_sapiens 9.00054e-42 174
ENST00000565216 BLOC1S6-012 protein_coding Homo_sapiens 0 302
ENST00000565323 BLOC1S6-015 protein_coding Homo_sapiens 0 370
ENST00000565409 BLOC1S6-018 protein_coding Homo_sapiens 0 370
ENST00000566801 BLOC1S6-014 protein_coding Homo_sapiens 4e-32 141
ENST00000567461 BLOC1S6-006 protein_coding Homo_sapiens 0 302
ENST00000567523 BLOC1S6-003 nonsense_mediated_decay Homo_sapiens 0 448
ENST00000568816 BLOC1S6-004 protein_coding Homo_sapiens 0 302
ENST00000568963 BLOC1S6-008 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000569076 BLOC1S6-009 protein_coding Homo_sapiens 0 289

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