C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148686 Hfm1-002 ENSMUSG00000043410 10090 - 5:106901887-106925890 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverOvaryPlacentaENSMUST00000148686
Transcript ID Bladder Liver Ovary Placenta
ENSMUST00000148686 0.015±0.01 0.028±0.02 0.028±0.01 0.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000906 CIL_000906_0002 VISTA 5:106264330-106866018
CIL_000699 CIL_000699_0002 CGP 5:106616739-106926321
CIL_00069J CIL_00069J_0002 CGP 5:106840192-106984432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000712 IMP resolution of meiotic recombination intermediates
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370425 HFM1-002 protein_coding Homo_sapiens 0 438
ENST00000481900 HFM1-001 retained_intron Homo_sapiens 0 438
ENST00000488023 HFM1-003 retained_intron Homo_sapiens 0 438

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