C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149384 Hnrnpdl-002 ENSMUSG00000029328 10090 - 5:100035426-100038895 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000149384
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000149384 11.171±4.39 26.430±5.83 92.375±0.00 18.267±3.92 29.458±5.60 11.172±2.12 8.613±0.70 10.141±2.50 17.342±3.02 9.370±0.00 29.090±14.23 56.155±60.84 16.530±21.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JO CIL_0007JO_0002 UCNEbase 5:99961884-100035864
CIL_00052Q CIL_00052Q_0003 CGP 5:100033577-100068762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISA DNA binding
GO:0003723 ISA RNA binding
GO:0005634 IDA nucleus
GO:0016071 ISA mRNA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295470 HNRNPDL-001 protein_coding Homo_sapiens 0 1219
ENST00000349655 HNRNPDL-005 nonsense_mediated_decay Homo_sapiens 0 1411
ENST00000427435 RP11-2P2.1-001 processed_pseudogene Homo_sapiens 7e-24 111
ENST00000502762 HNRNPDL-002 nonsense_mediated_decay Homo_sapiens 0 1411
ENST00000507721 HNRNPDL-004 protein_coding Homo_sapiens 0 1219
ENST00000514511 HNRNPDL-003 nonsense_mediated_decay Homo_sapiens 0 699
ENST00000602300 HNRNPDL-006 protein_coding Homo_sapiens 0 1219
ENST00000614627 HNRNPDL-201 protein_coding Homo_sapiens 0 832
ENST00000621267 HNRNPDL-202 protein_coding Homo_sapiens 0 1219

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