C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin I, skeletal, fast 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149529 Tnni2-003 ENSMUSG00000031097 10090 + 7:142442330-142444368 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000149529
Transcript ID Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000149529 0.168±0.08 0.167±0.00 0.185±0.03 0.431±0.03 0.451±0.45 0.278±0.00 0.909±0.55 1.921±1.24 0.074±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_00048J CIL_00048J_0002 CGP 7:142434850-142444410
CIL_0005ML CIL_0005ML_0003 CGP 7:142441808-142494867

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003009 IEA skeletal muscle contraction
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006937 IEA regulation of muscle contraction
GO:0031014 IEA troponin T binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252898 TNNI2-201 protein_coding Homo_sapiens 0 747
ENST00000381905 TNNI2-003 protein_coding Homo_sapiens 0 723
ENST00000381906 TNNI2-001 protein_coding Homo_sapiens 0 758
ENST00000381911 TNNI2-002 protein_coding Homo_sapiens 0 758
ENST00000617947 TNNI2-202 protein_coding Homo_sapiens 0 736

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