C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin I type 2 (skeletal, fast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252898 TNNI2-201 ENSG00000130598 9606 + 11:1839697-1841680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252898
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252898 2.212±0.00 0.098±0.00 162.578±0.00 0.438±0.07 0.081±0.00 0.177±0.11 0.169±0.00 5.561±0.00 293.580±0.00 0.668±0.00 3.579±1.24 6.242±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0001 VISTA 11:1663842-2266142
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_00048J CIL_00048J_0001 CGP 11:1828307-1841680
CIL_0005ML CIL_0005ML_0002 CGP 11:1838989-1892267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003009 IDA skeletal muscle contraction
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005861 IDA:IEA troponin complex
GO:0030049 TAS muscle filament sliding
GO:0031014 IPI troponin T binding
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149529 Tnni2-003 protein_coding Mus_musculus 0 747
ENSMUST00000105971 Tnni2-001 protein_coding Mus_musculus 0 747
ENSMUST00000129618 Tnni2-005 retained_intron Mus_musculus 0 723
ENSMUST00000105973 Tnni2-006 protein_coding Mus_musculus 0 508

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