C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: troponin I, skeletal, fast 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031097 Tnni2 10090 + 7:142441808-142444410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000105971 Tnni2-001 142441808-142444410 protein_coding
  ENSMUST00000105973 Tnni2-006 142443171-142444405 protein_coding
  ENSMUST00000129618 Tnni2-005 142442908-142444408 retained_intron
  ENSMUST00000131034 Tnni2-004 142442980-142443859 retained_intron
  ENSMUST00000145287 Tnni2-002 142441816-142444036 protein_coding
  ENSMUST00000149529 Tnni2-003 142442330-142444368 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105971ENSMUST00000105973ENSMUST00000129618ENSMUST00000131034ENSMUST00000145287ENSMUST00000149529
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105971 11.819±8.32 N/A 0.343±0.00 505.276±540.02 0.127±0.02 3.202±1.07 29.595±29.46 1.551±1.81 68.206±66.88 9947.709±302.65 3.992±1.81 2.377±0.29 0.185±0.03
ENSMUST00000105973 N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129618 0.175±0.02 0.069±0.00 0.075±0.00 0.297±0.10 0.157±0.03 N/A 0.040±0.00 0.348±0.10 0.171±0.00 N/A 0.709±0.57 0.915±0.42 N/A
ENSMUST00000131034 0.050±0.00 0.065±0.00 N/A 0.324±0.06 N/A N/A N/A N/A N/A N/A 0.301±0.00 N/A N/A
ENSMUST00000145287 0.082±0.00 N/A N/A 0.327±0.00 0.150±0.08 N/A N/A N/A N/A N/A 1.476±0.00 2.097±0.03 0.147±0.00
ENSMUST00000149529 N/A N/A 0.168±0.08 0.167±0.00 0.185±0.03 0.431±0.03 N/A 0.451±0.45 0.278±0.00 N/A 0.909±0.55 1.921±1.24 0.074±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_00048J CIL_00048J_0002 CGP 7:142434850-142444410
CIL_0005ML CIL_0005ML_0003 CGP 7:142441808-142494867

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003009 IEA skeletal muscle contraction
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005861 IEA troponin complex
GO:0006937 IEA regulation of muscle contraction
GO:0031014 IEA troponin T binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005841 tnni2a.2 troponin I, skeletal, fast 2a, tandem duplicate 2 protein_coding Danio_rerio
ENSDARG00000013752 tnni2a.3 troponin I, skeletal, fast 2a, tandem duplicate 3 protein_coding Danio_rerio
ENSDARG00000029069 tnni2a.4 troponin I, skeletal, fast 2a, tandem duplicate 4 protein_coding Danio_rerio
ENSDARG00000029995 tnni2b.2 troponin I, skeletal, fast 2b, tandem duplicate 2 protein_coding Danio_rerio
ENSDARG00000035958 tnni2b.1 troponin I, skeletal, fast 2b, tandem duplicate 1 protein_coding Danio_rerio
ENSDARG00000045592 tnni2a.1 troponin I, skeletal, fast 2a, tandem duplicate 1 protein_coding Danio_rerio
ENSG00000130598 TNNI2 troponin I type 2 (skeletal, fast) protein_coding Homo_sapiens

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