C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras responsive element binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149745 Rreb1-003 ENSMUSG00000039087 10090 + 13:37826932-37932691 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonOvaryTestisENSMUST00000149745
Transcript ID Adrenal Breast Colon Ovary Testis
ENSMUST00000149745 3.953±0.65 3.508±0.35 3.615±0.31 3.748±0.79 0.575±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S8 CIL_0003S8_0002 CGP 13:37345345-37952002
CIL_000817 CIL_000817_0002 VISTA 13:37577817-38179534
CIL_0003S7 CIL_0003S7_0002 CGP 13:37778400-37994190

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0006351 IEA transcription, DNA-templated
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334984 RREB1-003 protein_coding Homo_sapiens 0 3670
ENST00000349384 RREB1-002 protein_coding Homo_sapiens 0 3663
ENST00000379933 RREB1-004 protein_coding Homo_sapiens 0 3663
ENST00000379938 RREB1-001 protein_coding Homo_sapiens 0 3670
ENST00000471433 RREB1-011 protein_coding Homo_sapiens 0 713
ENST00000475946 RREB1-005 retained_intron Homo_sapiens 0 961
ENST00000483150 RREB1-008 protein_coding Homo_sapiens 0 2658
ENST00000491191 RREB1-007 protein_coding Homo_sapiens 0 586
ENST00000611109 RREB1-201 protein_coding Homo_sapiens 0 857

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