C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150636 Prpf40b-008 ENSMUSG00000023007 10090 + 15:99314906-99316813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000150636
Transcript ID Placenta
ENSMUST00000150636 5.144±1.25

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261897 PRPF40B-002 protein_coding Homo_sapiens 0 684
ENST00000335154 FMNL3-002 protein_coding Homo_sapiens 0 394
ENST00000380281 PRPF40B-001 protein_coding Homo_sapiens 0 684
ENST00000546626 PRPF40B-014 retained_intron Homo_sapiens 0 274
ENST00000548825 PRPF40B-019 protein_coding Homo_sapiens 0 684
ENST00000549547 PRPF40B-016 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000551269 PRPF40B-017 retained_intron Homo_sapiens 0 189

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