C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150641 Prpf40b-003 ENSMUSG00000023007 10090 + 15:99295239-99317018 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000150641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000150641 3.011±1.62 3.626±0.35 3.368±0.05 10.697±5.65 2.119±0.54 1.452±0.27 1.836±0.54 2.204±0.44 0.835±0.22 2.598±0.10 1.396±0.28 6.975±1.97 0.598±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261897 PRPF40B-002 protein_coding Homo_sapiens 0 3506
ENST00000335154 FMNL3-002 protein_coding Homo_sapiens 0 603
ENST00000380281 PRPF40B-001 protein_coding Homo_sapiens 0 3629
ENST00000546626 PRPF40B-014 retained_intron Homo_sapiens 0 353
ENST00000548399 PRPF40B-012 retained_intron Homo_sapiens 0 403
ENST00000548436 PRPF40B-009 retained_intron Homo_sapiens 0 1192
ENST00000548825 PRPF40B-019 protein_coding Homo_sapiens 0 3611
ENST00000549547 PRPF40B-016 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000551111 PRPF40B-011 retained_intron Homo_sapiens 0 446
ENST00000551269 PRPF40B-017 retained_intron Homo_sapiens 0 250
ENST00000551418 PRPF40B-010 retained_intron Homo_sapiens 0 520

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