C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: orthopedia homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306422 OTP-001 ENSG00000171540 9606 - 5:77628712-77639688 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartTestisENST00000306422
Transcript ID Heart Testis
ENST00000306422 0.011±0.00 0.143±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000979 CIL_000979_0001 VISTA 5:77339400-77940441
CIL_00091A CIL_00091A_0001 VISTA 5:77345011-77945571
CIL_0008DK CIL_0008DK_0001 VISTA 5:77424780-78026683
CIL_00091B CIL_00091B_0001 VISTA 5:77543897-78144918
CIL_0007SL CIL_0007SL_0001 VISTA 5:77545919-78149307
CIL_00091C CIL_00091C_0001 VISTA 5:77551756-78152775
CIL_0007OX CIL_0007OX_0001 UCNEbase 5:77560331-77741345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002052 IEA positive regulation of neuroblast proliferation
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021879 IEA forebrain neuron differentiation
GO:0021979 IEA hypothalamus cell differentiation
GO:0021985 IEA neurohypophysis development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022195 Otp-001 protein_coding Mus_musculus 0 1825
ENSMUST00000184985 Otp-002 processed_transcript Mus_musculus 0 730
ENSDART00000027268 otpa-001 protein_coding Danio_rerio 0.000000002 69
ENSMUST00000136586 Msi1-008 processed_transcript Mus_musculus 0.00002 57
ENSMUST00000139918 Msi1-006 retained_intron Mus_musculus 0.00002 57
ENSMUST00000131079 Msi1-003 processed_transcript Mus_musculus 0.00002 57
ENSMUST00000067168 Msi1-004 protein_coding Mus_musculus 0.00002 57
ENSMUST00000150779 Msi1-001 protein_coding Mus_musculus 0.00002 57

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