C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musashi RNA-binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257552 MSI1-001 ENSG00000135097 9606 - 12:120341330-120369180 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000257552
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000257552 0.101±0.00 0.150±0.00 1.218±1.01 0.382±0.00 0.432±0.31 0.319±0.24 0.117±0.09 0.056±0.00 1.780±1.93 0.212±0.02 1.832±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005844 IEA polysome
GO:0007399 TAS nervous system development
GO:0008266 IEA poly(U) RNA binding
GO:0009725 IEA response to hormone
GO:0030855 IEA epithelial cell differentiation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150779 Msi1-001 protein_coding Mus_musculus 0 2122
ENSMUST00000151444 Msi1-002 retained_intron Mus_musculus 0 1236
ENSMUST00000067168 Msi1-004 protein_coding Mus_musculus 0 1107
ENSMUST00000139918 Msi1-006 retained_intron Mus_musculus 0 953
ENSMUST00000131079 Msi1-003 processed_transcript Mus_musculus 0 905
ENSMUST00000136586 Msi1-008 processed_transcript Mus_musculus 0 556
ENSMUST00000145840 Msi1-007 processed_transcript Mus_musculus 0 553
ENSMUST00000130849 Msi1-009 retained_intron Mus_musculus 0 497

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