C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151289 Sgms1-004 ENSMUSG00000040451 10090 - 19:32123479-32210990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000151289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000151289 6.125±2.32 5.848±1.47 8.269±0.37 2.149±1.08 6.291±3.70 4.241±1.25 7.128±1.83 7.904±1.14 4.082±2.52 15.940±5.81 5.606±1.32 6.826±2.61 10.834±5.21 20.509±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IG CIL_0000IG_0002 CGP 19:31984654-32389714

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000138 ISA Golgi trans cisterna
GO:0005634 TAS nucleus
GO:0005783 TAS endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0006686 ISS sphingomyelin biosynthetic process
GO:0006915 IEA apoptotic process
GO:0016049 IDA cell growth
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0030173 ISS integral component of Golgi membrane
GO:0033188 IMP sphingomyelin synthase activity
GO:0047493 ISS ceramide cholinephosphotransferase activity
GO:2001237 IDA negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361543 SGMS1-201 protein_coding Homo_sapiens 0 1053
ENST00000361781 SGMS1-003 protein_coding Homo_sapiens 0 2900
ENST00000429490 SGMS1-202 protein_coding Homo_sapiens 0 1587
ENST00000602619 SGMS1-005 protein_coding Homo_sapiens 0 285
ENST00000619438 SGMS1-203 protein_coding Homo_sapiens 0 1103

Loading