C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule-actin crosslinking factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151346 Macf1-009 ENSMUSG00000028649 10090 - 4:123349716-123544831 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000151346
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000151346 5.172±0.00 3.968±1.21 1.358±0.10 2.117±0.61 2.205±0.00 0.793±0.28 8.869±0.50 0.731±0.12 7.429±3.73 7.474±6.24 2.375±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000990 CIL_000990_0002 VISTA 4:123304867-123907516
CIL_0001ZU CIL_0001ZU_0002 CGP 4:123349633-123718202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001707 IMP mesoderm formation
GO:0003779 IDA actin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0006200 IEA ATP catabolic process
GO:0006620 IMP posttranslational protein targeting to membrane
GO:0006928 IMP cellular component movement
GO:0007050 IEA cell cycle arrest
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0008017 IDA microtubule binding
GO:0015629 IDA actin cytoskeleton
GO:0015630 IDA microtubule cytoskeleton
GO:0016055 IGI Wnt signaling pathway
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054274 macf1-201 protein_coding Danio_rerio 0 448
ENSDART00000146394 macf1-001 protein_coding Danio_rerio 0 448
ENST00000289893 MACF1-005 protein_coding Homo_sapiens 0 15290
ENST00000360115 MACF1-010 protein_coding Homo_sapiens 0 3181
ENST00000361689 MACF1-001 protein_coding Homo_sapiens 0 20660
ENST00000372915 MACF1-028 protein_coding Homo_sapiens 0 8578
ENST00000372925 MACF1-003 protein_coding Homo_sapiens 0 8586
ENST00000422234 MACF1-024 protein_coding Homo_sapiens 0 291
ENST00000442046 MACF1-007 protein_coding Homo_sapiens 0 1725
ENST00000446276 MACF1-011 protein_coding Homo_sapiens 0 1725
ENST00000462103 MACF1-026 processed_transcript Homo_sapiens 0 268
ENST00000462496 MACF1-023 processed_transcript Homo_sapiens 0 575
ENST00000469490 MACF1-021 processed_transcript Homo_sapiens 0 1009
ENST00000472385 MACF1-018 retained_intron Homo_sapiens 0 307
ENST00000473843 MACF1-020 processed_transcript Homo_sapiens 0 422
ENST00000476350 MACF1-004 processed_transcript Homo_sapiens 0 4638
ENST00000482035 MACF1-025 protein_coding Homo_sapiens 0 1179
ENST00000484393 MACF1-019 retained_intron Homo_sapiens 0 532
ENST00000485063 MACF1-017 retained_intron Homo_sapiens 0 446
ENST00000487656 MACF1-022 processed_transcript Homo_sapiens 0 233
ENST00000496360 MACF1-006 processed_transcript Homo_sapiens 0 937
ENST00000496804 MACF1-002 nonsense_mediated_decay Homo_sapiens 0 2636
ENST00000497807 MACF1-008 processed_transcript Homo_sapiens 0 1592
ENST00000497964 MACF1-009 processed_transcript Homo_sapiens 0 761
ENST00000524432 MACF1-030 protein_coding Homo_sapiens 0 4892
ENST00000530262 MACF1-029 protein_coding Homo_sapiens 0 5869
ENST00000564288 MACF1-032 protein_coding Homo_sapiens 0 13320
ENST00000567887 MACF1-031 protein_coding Homo_sapiens 0 13320

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