C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151477 Tnrc18-001 ENSMUSG00000039477 10090 - 5:142754789-142817662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverOvaryPlacentaTestisENSMUST00000151477
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000151477 1.259±0.15 1.794±0.00 4.215±0.25 4.783±0.00 2.117±0.57 0.301±0.09 7.103±0.00 3.218±2.53 1.155±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_00027K CIL_00027K_0003 CGP 5:142702101-142817662
CIL_0002M4 CIL_0002M4_0002 CGP 5:142750380-142895421

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399434 TNRC18-002 protein_coding Homo_sapiens 0 213
ENST00000399537 TNRC18-001 protein_coding Homo_sapiens 0 3954
ENST00000413081 TNRC18-010 protein_coding Homo_sapiens 0 961
ENST00000430969 TNRC18-201 protein_coding Homo_sapiens 0 3954
ENST00000434361 TNRC18-009 protein_coding Homo_sapiens 0 213
ENST00000440081 TNRC18-014 protein_coding Homo_sapiens 0 652
ENST00000502875 TNRC18P1-001 processed_pseudogene Homo_sapiens 0 2091

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