C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151913 Rfx8-001 ENSMUSG00000057173 10090 - 1:39665306-39720997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000151913
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000151913 0.198±0.16 0.100±0.04 0.068±0.02 0.085±0.01 0.020±0.00 0.080±0.04 0.184±0.02 0.024±0.00 0.033±0.02 0.134±0.06 0.027±0.00 0.163±0.08 0.078±0.07 21.709±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0002 VISTA 1:39141367-39744845
CIL_0004QX CIL_0004QX_0002 CGP 1:39618406-39720997

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000481179 RFX8-003 nonsense_mediated_decay Homo_sapiens 0 634
ENST00000484091 RFX8-004 nonsense_mediated_decay Homo_sapiens 0 278

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