C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152247 Tnrc18-003 ENSMUSG00000039477 10090 - 5:142750380-142788523 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungOvaryPlacentaENSMUST00000152247
Transcript ID Adipose Breast Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000152247 1.197±0.43 1.864±0.00 0.686±0.00 1.529±0.55 0.710±0.23 1.633±0.00 6.892±4.21 9.972±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_00027K CIL_00027K_0003 CGP 5:142702101-142817662
CIL_0002M4 CIL_0002M4_0002 CGP 5:142750380-142895421

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399537 TNRC18-001 protein_coding Homo_sapiens 0 3932
ENST00000413081 TNRC18-010 protein_coding Homo_sapiens 0 961
ENST00000430969 TNRC18-201 protein_coding Homo_sapiens 0 3932
ENST00000440081 TNRC18-014 protein_coding Homo_sapiens 0 652
ENST00000502875 TNRC18P1-001 processed_pseudogene Homo_sapiens 0 2052

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