C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152848 Pax9-002 ENSMUSG00000001497 10090 + 12:56695729-56710346 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungMuscleOvaryTestisENSMUST00000152848
Transcript ID Adrenal Brain Breast Colon Heart Lung Muscle Ovary Testis
ENSMUST00000152848 0.016±0.00 0.028±0.00 0.042±0.03 0.026±0.01 0.055±0.01 2.308±2.15 0.021±0.01 0.044±0.02 2.945±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_0008XR CIL_0008XR_0002 VISTA 12:56140796-56741827
CIL_0008R1 CIL_0008R1_0002 VISTA 12:56154748-56756277
CIL_00091S CIL_00091S_0002 VISTA 12:56158078-56760488
CIL_0007TC CIL_0007TC_0002 VISTA 12:56181967-56783344
CIL_0007XY CIL_0007XY_0002 VISTA 12:56220183-56821029
CIL_00045C CIL_00045C_0002 CGP 12:56611389-56712822
CIL_0000OF CIL_0000OF_0002 CGP 12:56691767-57197472

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361487 PAX9-001 protein_coding Homo_sapiens 0 1725
ENST00000398485 PAX1-001 protein_coding Homo_sapiens 0 416
ENST00000402703 PAX9-201 protein_coding Homo_sapiens 0 1725
ENST00000444366 PAX1-002 protein_coding Homo_sapiens 0 416
ENST00000554201 PAX9-002 protein_coding Homo_sapiens 0 1430
ENST00000555639 PAX9-005 processed_transcript Homo_sapiens 0 370
ENST00000557107 PAX9-003 processed_transcript Homo_sapiens 0 230
ENST00000613128 PAX1-201 protein_coding Homo_sapiens 0 416

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