C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: papilin, proteoglycan-like sulfated glycoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152904 Papln-003 ENSMUSG00000021223 10090 + 12:83763662-83781132 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMuscleOvaryPlacentaENSMUST00000152904
Transcript ID Kidney Muscle Ovary Placenta
ENSMUST00000152904 0.169±0.00 0.068±0.00 0.281±0.00 0.212±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0002 VISTA 12:83418739-84022790
CIL_0001TQ CIL_0001TQ_0002 CGP 12:83688203-83792382
CIL_0001TR CIL_0001TR_0002 CGP 12:83763634-83921934

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216658 PAPLN-004 nonsense_mediated_decay Homo_sapiens 0 1042
ENST00000340738 PAPLN-001 protein_coding Homo_sapiens 0 614
ENST00000554301 PAPLN-002 protein_coding Homo_sapiens 0 1037
ENST00000555123 PAPLN-007 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000555445 PAPLN-003 protein_coding Homo_sapiens 0 1037

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