C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153117 Taf6-004 ENSMUSG00000036980 10090 - 5:138178628-138187221 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0003DY CIL_0003DY_0002 CGP 5:138164583-138178708
CIL_0005LK CIL_0005LK_0002 CGP 5:138172002-138187451
CIL_0005LJ CIL_0005LJ_0002 CGP 5:138178617-138193918

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344095 TAF6-001 protein_coding Homo_sapiens 0 1849
ENST00000416938 AP4M1-017 nonsense_mediated_decay Homo_sapiens 0 226
ENST00000421980 TAF6-003 nonsense_mediated_decay Homo_sapiens 0 2302
ENST00000437822 TAF6-002 protein_coding Homo_sapiens 0 1849
ENST00000451699 TAF6-009 protein_coding Homo_sapiens 6e-29 132
ENST00000452041 TAF6-007 protein_coding Homo_sapiens 0 1849
ENST00000452438 TAF6-014 protein_coding Homo_sapiens 0.0000002 60
ENST00000453269 TAF6-004 protein_coding Homo_sapiens 0 1849
ENST00000460673 TAF6-012 protein_coding Homo_sapiens 2e-27 126
ENST00000472509 TAF6-016 protein_coding Homo_sapiens 0 1849
ENST00000487115 TAF6-006 retained_intron Homo_sapiens 0 309
ENST00000497233 TAF6-011 processed_transcript Homo_sapiens 4e-29 132

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