C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 4, group A, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153369 Nr4a3-004 ENSMUSG00000028341 10090 + 4:48049114-48086447 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000153369
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000153369 0.164±0.00 0.331±0.05 0.779±0.00 0.354±0.17 0.109±0.00 0.123±0.00 0.008±0.00 0.240±0.10 0.426±0.51 0.102±0.06 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HI CIL_0007HI_0003 CGP 4:47474658-48086447
CIL_0007H8 CIL_0007H8_0003 CGP 4:48045153-48186507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001707 IMP mesoderm formation
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0007411 IMP axon guidance
GO:0008270 IEA zinc ion binding
GO:0021766 IMP hippocampus development
GO:0030522 IEA intracellular receptor signaling pathway
GO:0030534 IMP adult behavior
GO:0042472 IMP inner ear morphogenesis
GO:0042542 IMP response to hydrogen peroxide
GO:0043066 IMP negative regulation of apoptotic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045787 IMP positive regulation of cell cycle
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048752 IMP semicircular canal morphogenesis
GO:0050885 IMP neuromuscular process controlling balance
GO:0060005 IMP vestibular reflex
GO:2000108 IMP positive regulation of leukocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330847 NR4A3-003 protein_coding Homo_sapiens 0 2643
ENST00000338488 NR4A3-002 protein_coding Homo_sapiens 0 1343
ENST00000395097 NR4A3-001 protein_coding Homo_sapiens 0 2534
ENST00000618101 NR4A3-201 protein_coding Homo_sapiens 0 2665

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