C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153442 Hnrnpdl-004 ENSMUSG00000029328 10090 - 5:100034721-100038869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153442
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153442 7.205±4.07 45.175±10.96 40.254±17.30 8.573±1.40 9.107±1.03 5.582±2.19 24.144±18.59 18.321±3.70 16.113±1.47 32.532±7.20 29.130±7.00 4.551±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JO CIL_0007JO_0002 UCNEbase 5:99961884-100035864
CIL_00052Q CIL_00052Q_0003 CGP 5:100033577-100068762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 ISA DNA binding
GO:0003723 ISA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016071 ISA mRNA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295470 HNRNPDL-001 protein_coding Homo_sapiens 0 1430
ENST00000349655 HNRNPDL-005 nonsense_mediated_decay Homo_sapiens 0 1430
ENST00000427435 RP11-2P2.1-001 processed_pseudogene Homo_sapiens 7e-24 111
ENST00000502762 HNRNPDL-002 nonsense_mediated_decay Homo_sapiens 0 1430
ENST00000507721 HNRNPDL-004 protein_coding Homo_sapiens 0 2887
ENST00000508119 HNRNPD-012 processed_transcript Homo_sapiens 6e-34 148
ENST00000514325 HNRNPD-006 retained_intron Homo_sapiens 4e-33 148
ENST00000514511 HNRNPDL-003 nonsense_mediated_decay Homo_sapiens 0 1258
ENST00000602300 HNRNPDL-006 protein_coding Homo_sapiens 0 1430
ENST00000614627 HNRNPDL-201 protein_coding Homo_sapiens 0 1042
ENST00000621267 HNRNPDL-202 protein_coding Homo_sapiens 0 1430

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