C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153541 Itgb2-003 ENSMUSG00000000290 10090 + 10:77530380-77565708 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonKidneyLiverMusclePlacentaTestisENSMUST00000153541
Transcript ID Adipose Adrenal Colon Kidney Liver Muscle Placenta Testis
ENSMUST00000153541 3.733±0.64 2.420±0.19 1.428±0.24 1.309±0.15 0.582±0.00 0.151±0.08 0.463±0.00 0.310±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007155 IMP cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IDA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009986 IDA cell surface
GO:0016020 IDA membrane
GO:0016337 IGI single organismal cell-cell adhesion
GO:0030593 IMP neutrophil chemotaxis
GO:0043235 ISO receptor complex
GO:0045121 IDA membrane raft
GO:0045123 IMP cellular extravasation
GO:0050798 IMP activated T cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302347 ITGB2-201 protein_coding Homo_sapiens 0 1299
ENST00000320216 ITGB2-010 protein_coding Homo_sapiens 0 893
ENST00000355153 ITGB2-001 protein_coding Homo_sapiens 0 1299
ENST00000397850 ITGB2-002 protein_coding Homo_sapiens 0 1299
ENST00000397852 ITGB2-005 protein_coding Homo_sapiens 0 1297
ENST00000397854 ITGB2-003 protein_coding Homo_sapiens 0 350
ENST00000397857 ITGB2-004 protein_coding Homo_sapiens 0 1299
ENST00000475170 ITGB2-006 retained_intron Homo_sapiens 0 350
ENST00000479202 ITGB2-011 retained_intron Homo_sapiens 0 320
ENST00000498666 ITGB2-007 retained_intron Homo_sapiens 0 1007
ENST00000521987 ITGB2-018 processed_transcript Homo_sapiens 0 193
ENST00000522931 ITGB2-022 protein_coding Homo_sapiens 0 368
ENST00000523323 ITGB2-013 nonsense_mediated_decay Homo_sapiens 0 1295
ENST00000523663 ITGB2-024 protein_coding Homo_sapiens 0 394
ENST00000610622 ITGB2-202 protein_coding Homo_sapiens 0 350

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