C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6542
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153606 Gm6542-001 ENSMUSG00000085172 10090 + 18:36609958-36610729 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153606
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153606 0.379±0.12 0.223±0.01 0.206±0.10 1.351±1.65 0.404±0.14 0.222±0.07 0.306±0.24 0.520±0.15 0.291±0.23 0.159±0.10 0.061±0.01 0.486±0.43 0.122±0.07 1.324±2.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZO CIL_0006ZO_0002 CGP 18:36528157-36665917

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000044462 PSMA4-001 protein_coding Homo_sapiens 0 989
ENST00000413382 PSMA4-004 protein_coding Homo_sapiens 0 664
ENST00000557929 PSMA4-005 processed_transcript Homo_sapiens 0 712
ENST00000558094 PSMA4-021 protein_coding Homo_sapiens 0 309
ENST00000558281 PSMA4-019 protein_coding Homo_sapiens 0 676
ENST00000558341 PSMA4-017 protein_coding Homo_sapiens 0 387
ENST00000558639 PSMA4-010 retained_intron Homo_sapiens 0 390
ENST00000559082 PSMA4-006 protein_coding Homo_sapiens 0 989
ENST00000559146 PSMA4-018 protein_coding Homo_sapiens 0 468
ENST00000559154 PSMA4-020 protein_coding Homo_sapiens 0 466
ENST00000559365 PSMA4-015 protein_coding Homo_sapiens 0 872
ENST00000559437 PSMA4-016 protein_coding Homo_sapiens 0 830
ENST00000559934 PSMA4-002 retained_intron Homo_sapiens 0 878
ENST00000559948 PSMA4-014 protein_coding Homo_sapiens 0 741
ENST00000560033 PSMA4-007 retained_intron Homo_sapiens 0 252
ENST00000560099 PSMA4-003 retained_intron Homo_sapiens 0 664
ENST00000560217 PSMA4-009 protein_coding Homo_sapiens 0 769
ENST00000560737 PSMA4-012 protein_coding Homo_sapiens 0 911
ENST00000560842 PSMA4-011 retained_intron Homo_sapiens 0.00000000000001 84

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