C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559146 PSMA4-018 ENSG00000041357 9606 + 15:78540440-78546696 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000559146
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000559146 2.381±0.00 7.488±0.00 9.917±0.00 13.494±0.00 5.622±0.00 20.143±0.00 15.781±0.00 7.455±0.00 18.217±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TW CIL_0003TW_0001 CGP 15:78540405-78595269

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IEA endopeptidase activity
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005839 IEA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153606 Gm6542-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000172407 Psma4-002 protein_coding Mus_musculus 0 446
ENSMUST00000034848 Psma4-001 protein_coding Mus_musculus 0 446
ENSMUST00000164679 Psma4-005 retained_intron Mus_musculus 0 363
ENSMUST00000169008 Psma4-006 retained_intron Mus_musculus 0 359
ENSMUST00000171900 Psma4-004 protein_coding Mus_musculus 0 346
ENSMUST00000171578 Psma4-003 retained_intron Mus_musculus 0 318

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