C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560217 PSMA4-009 ENSG00000041357 9606 + 15:78540405-78549037 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000560217
Transcript ID Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000560217 2.836±0.00 6.304±0.00 7.129±0.00 8.123±0.00 13.566±0.00 7.413±4.11 29.982±0.00 30.429±0.00 21.631±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TW CIL_0003TW_0001 CGP 15:78540405-78595269

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005839 IEA proteasome core complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034848 Psma4-001 protein_coding Mus_musculus 0 876
ENSMUST00000153606 Gm6542-001 processed_pseudogene Mus_musculus 0 769
ENSMUST00000172407 Psma4-002 protein_coding Mus_musculus 0 662
ENSMUST00000171578 Psma4-003 retained_intron Mus_musculus 0 516
ENSMUST00000171900 Psma4-004 protein_coding Mus_musculus 0 399
ENSMUST00000169008 Psma4-006 retained_intron Mus_musculus 0 339
ENSMUST00000164679 Psma4-005 retained_intron Mus_musculus 2e-24 117

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