C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558281 PSMA4-019 ENSG00000041357 9606 + 15:78540478-78548970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyMuscleOvaryENST00000558281
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Muscle Ovary
ENST00000558281 10.195±0.00 17.692±0.00 3.139±0.00 9.063±4.19 18.489±0.00 9.094±0.00 10.742±3.95 9.015±0.00 6.896±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TW CIL_0003TW_0001 CGP 15:78540405-78595269

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IEA endopeptidase activity
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005839 IEA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034848 Psma4-001 protein_coding Mus_musculus 0 769
ENSMUST00000172407 Psma4-002 protein_coding Mus_musculus 0 756
ENSMUST00000171578 Psma4-003 retained_intron Mus_musculus 0 726
ENSMUST00000153606 Gm6542-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000171900 Psma4-004 protein_coding Mus_musculus 0 638
ENSMUST00000169008 Psma4-006 retained_intron Mus_musculus 0 590
ENSMUST00000164679 Psma4-005 retained_intron Mus_musculus 0 359

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