C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: solute carrier family 38, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000267488 SLC38A6-001 ENSG00000139974 9606 + 14:60981162-61052630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000267488
Transcript ID Placenta
ENST00000267488 1.722±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SK CIL_0006SK_0002 CGP 14:60734742-60981358
CIL_00035S CIL_00035S_0002 CGP 14:60971451-61083733
CIL_0006SI CIL_0006SI_0002 CGP 14:60981114-61550976

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006814 IEA sodium ion transport
GO:0006865 IEA amino acid transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140523 Slc38a6-001 protein_coding Mus_musculus 0 1323
ENSMUST00000134247 Slc38a6-007 retained_intron Mus_musculus 0 326
ENSMUST00000150996 Slc38a6-008 retained_intron Mus_musculus 0 324
ENSMUST00000153941 Slc38a6-005 protein_coding Mus_musculus 0 315
ENSMUST00000122920 Slc38a6-006 protein_coding Mus_musculus 0 259
ENSMUST00000058139 Slc38a6-002 nonsense_mediated_decay Mus_musculus 0 259
ENSMUST00000126488 Slc38a6-003 protein_coding Mus_musculus 0 259
ENSMUST00000101313 Slc38a6-004 protein_coding Mus_musculus 0 233

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