C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: numb gene homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154043 Numb-003 ENSMUSG00000021224 10090 - 12:83795439-83842343 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000154043
Transcript ID Adipose Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000154043 3.132±0.00 2.415±0.00 25.523±9.79 13.072±4.30 5.606±1.10 7.981±2.03 8.316±2.59 7.376±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0002 VISTA 12:83418739-84022790
CIL_0001TR CIL_0001TR_0002 CGP 12:83763634-83921934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005769 IDA early endosome
GO:0005886 TAS plasma membrane
GO:0007399 IMP nervous system development
GO:0007405 IGI neuroblast proliferation
GO:0007409 IDA axonogenesis
GO:0008013 IPI beta-catenin binding
GO:0016323 IDA basolateral plasma membrane
GO:0019897 IDA extrinsic component of plasma membrane
GO:0021670 IMP lateral ventricle development
GO:0021849 IMP neuroblast division in subventricular zone
GO:0030862 IMP positive regulation of polarized epithelial cell differentiation
GO:0030900 IMP forebrain development
GO:0034332 IGI adherens junction organization
GO:0045177 IDA apical part of cell
GO:0045294 IPI alpha-catenin binding
GO:0045296 IPI cadherin binding
GO:0045746 IMP negative regulation of Notch signaling pathway
GO:0050769 IMP positive regulation of neurogenesis
GO:0060487 IMP lung epithelial cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355058 NUMB-201 protein_coding Homo_sapiens 0 2121
ENST00000356296 NUMB-006 protein_coding Homo_sapiens 0 1072
ENST00000359560 NUMB-202 protein_coding Homo_sapiens 0 2398
ENST00000535282 NUMB-203 protein_coding Homo_sapiens 0 1072
ENST00000544991 NUMB-204 protein_coding Homo_sapiens 0 857
ENST00000553997 NUMB-024 processed_transcript Homo_sapiens 0 728
ENST00000554014 NUMB-023 retained_intron Homo_sapiens 0 525
ENST00000554315 NUMB-005 retained_intron Homo_sapiens 0 828
ENST00000554394 NUMB-032 protein_coding Homo_sapiens 0 669
ENST00000554521 NUMB-011 protein_coding Homo_sapiens 0 857
ENST00000554546 NUMB-001 protein_coding Homo_sapiens 0 1349
ENST00000554818 NUMB-021 protein_coding Homo_sapiens 0 278
ENST00000555238 NUMB-004 protein_coding Homo_sapiens 0 2121
ENST00000555307 NUMB-022 protein_coding Homo_sapiens 0 669
ENST00000555394 NUMB-002 protein_coding Homo_sapiens 0 1072
ENST00000555738 NUMB-013 protein_coding Homo_sapiens 0 857
ENST00000555859 NUMB-027 protein_coding Homo_sapiens 0 675
ENST00000555987 NUMB-026 protein_coding Homo_sapiens 0 285
ENST00000556112 NUMB-028 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000556772 NUMB-007 protein_coding Homo_sapiens 0 2121
ENST00000556989 NUMB-008 retained_intron Homo_sapiens 0 551
ENST00000557486 NUMB-025 retained_intron Homo_sapiens 0 612
ENST00000557597 NUMB-003 protein_coding Homo_sapiens 0 2398
ENST00000557774 NUMB-020 retained_intron Homo_sapiens 0 278
ENST00000559312 NUMB-010 protein_coding Homo_sapiens 0 857
ENST00000560335 NUMB-012 protein_coding Homo_sapiens 0 857

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