C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154221 Ppfibp1-006 ENSMUSG00000016487 10090 + 6:146992480-147005967 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000154221
Transcript ID Ovary Placenta Testis
ENSMUST00000154221 35.446±0.00 46.882±0.00 31.399±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0002 CGP 6:146850104-147032025

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318304 PPFIBP1-007 protein_coding Homo_sapiens 0 761
ENST00000537927 PPFIBP1-003 protein_coding Homo_sapiens 0 761
ENST00000540114 PPFIBP1-002 protein_coding Homo_sapiens 0 691
ENST00000545069 RP11-582E3.4-001 unprocessed_pseudogene Homo_sapiens 0 516

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