C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016487 Ppfibp1 10090 + 6:146888487-147032025 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016631 Ppfibp1-001 146888487-147032025 protein_coding
  ENSMUST00000111623 Ppfibp1-002 146888589-147032025 protein_coding
  ENSMUST00000123902 Ppfibp1-004 146999545-147032023 retained_intron
  ENSMUST00000126774 Ppfibp1-007 146996442-147002249 processed_transcript
  ENSMUST00000133825 Ppfibp1-008 147001694-147005995 retained_intron
  ENSMUST00000136837 Ppfibp1-010 147010879-147019580 protein_coding
  ENSMUST00000149203 Ppfibp1-005 147000315-147017445 retained_intron
  ENSMUST00000154221 Ppfibp1-006 146992480-147005967 protein_coding
  ENSMUST00000155415 Ppfibp1-009 147002243-147019173 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016631ENSMUST00000111623ENSMUST00000123902ENSMUST00000149203ENSMUST00000154221
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016631 12.429±2.13 5.388±0.66 11.954±4.82 2.875±0.25 5.036±0.83 4.628±1.22 4.841±1.17 8.264±2.78 3.825±1.17 15.941±4.82 1.570±0.71 12.105±4.03 21.637±8.03 4.372±1.82
ENSMUST00000111623 4.593±0.00 N/A 5.986±0.70 2.898±3.18 6.222±1.53 N/A 3.477±1.72 3.373±1.14 N/A N/A 1.041±0.39 8.226±0.65 5.890±0.08 2.363±0.54
ENSMUST00000123902 2.681±0.17 1.113±0.29 N/A 0.655±0.11 1.947±0.56 0.769±0.00 N/A N/A N/A N/A N/A 1.486±0.00 N/A 0.582±0.00
ENSMUST00000149203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.060±0.20 N/A N/A
ENSMUST00000154221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.446±0.00 46.882±0.00 31.399±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0002 CGP 6:146850104-147032025

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005925 IEA focal adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020236 PPFIBP1 (1 of 2) PTPRF interacting protein, binding protein 1 (liprin beta 1) protein_coding Danio_rerio
ENSDARG00000045749 PPFIBP1 (2 of 2) PTPRF interacting protein, binding protein 1 (liprin beta 1) protein_coding Danio_rerio
ENSG00000110841 PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) protein_coding Homo_sapiens

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