C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 1 (liprin beta 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318304 PPFIBP1-007 ENSG00000110841 9606 + 12:27524206-27695564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLungOvaryTestisENST00000318304
Transcript ID Brain Breast Heart Kidney Lung Ovary Testis
ENST00000318304 2.151±0.59 1.054±0.00 15.163±0.00 1.503±0.72 2.048±0.00 1.905±0.00 0.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056H CIL_00056H_0001 CGP 12:27466810-27695564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 NAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 TAS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016631 Ppfibp1-001 protein_coding Mus_musculus 0 2158
ENSMUST00000123902 Ppfibp1-004 retained_intron Mus_musculus 0 2073
ENSMUST00000111623 Ppfibp1-002 protein_coding Mus_musculus 0 2069
ENSMUST00000154221 Ppfibp1-006 protein_coding Mus_musculus 0 761
ENSMUST00000155415 Ppfibp1-009 protein_coding Mus_musculus 0 483
ENSMUST00000126774 Ppfibp1-007 processed_transcript Mus_musculus 0 331
ENSMUST00000136837 Ppfibp1-010 protein_coding Mus_musculus 0 313
ENSMUST00000149203 Ppfibp1-005 retained_intron Mus_musculus 2e-32 147
ENSMUST00000140795 Abat-002 retained_intron Mus_musculus 0.00003 57
ENSMUST00000159255 Mettl13-002 retained_intron Mus_musculus 0.0004 53

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