C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Luc7 homolog (S. cerevisiae)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154235 Luc7l-005 ENSMUSG00000024188 10090 + 17:26252966-26281992 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungMuscleOvaryPlacentaENSMUST00000154235
Transcript ID Adrenal Breast Colon Liver Lung Muscle Ovary Placenta
ENSMUST00000154235 12.030±6.90 2.617±0.00 1.852±0.04 2.975±1.12 3.082±0.00 0.985±0.00 5.498±1.59 3.476±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_0002RY CIL_0002RY_0002 CGP 17:26211822-26285504

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0045843 IDA negative regulation of striated muscle tissue development
GO:0050733 IPI RS domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000137684 luc7l-004 processed_transcript Danio_rerio 8e-23 113
ENSDART00000133284 luc7l-003 processed_transcript Danio_rerio 6e-19 100
ENSDART00000137218 luc7l-005 nonsense_mediated_decay Danio_rerio 2e-18 99
ENST00000293872 LUC7L-003 protein_coding Homo_sapiens 0 1567
ENST00000337351 LUC7L-001 protein_coding Homo_sapiens 0 1260
ENST00000397780 LUC7L-007 protein_coding Homo_sapiens 0 1260
ENST00000397783 LUC7L-002 protein_coding Homo_sapiens 0 1260
ENST00000418978 LUC7L-009 nonsense_mediated_decay Homo_sapiens 0 761
ENST00000419516 LUC7L-004 nonsense_mediated_decay Homo_sapiens 0 1258
ENST00000426094 LUC7L-006 nonsense_mediated_decay Homo_sapiens 0 2752
ENST00000428363 LUC7L-020 protein_coding Homo_sapiens 0 331
ENST00000429378 LUC7L-016 protein_coding Homo_sapiens 0 632
ENST00000430864 LUC7L-015 protein_coding Homo_sapiens 0 736
ENST00000442701 LUC7L-018 protein_coding Homo_sapiens 0 300
ENST00000443357 LUC7L-012 protein_coding Homo_sapiens 0 339
ENST00000464711 LUC7L-008 retained_intron Homo_sapiens 0 1140
ENST00000467552 LUC7L-011 retained_intron Homo_sapiens 0 398
ENST00000468732 LUC7L-017 retained_intron Homo_sapiens 0 534
ENST00000469109 LUC7L-013 retained_intron Homo_sapiens 0 335
ENST00000490762 LUC7L-005 retained_intron Homo_sapiens 0 1033
ENST00000494366 LUC7L-010 processed_transcript Homo_sapiens 0 335
ENST00000494545 LUC7L-019 retained_intron Homo_sapiens 0 302
ENST00000495349 LUC7L-014 retained_intron Homo_sapiens 0 891

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