C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155973 Sf1-010 ENSMUSG00000024949 10090 + 19:6364557-6372619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000155973
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000155973 170.134±0.00 144.678±75.31 238.246±101.62 240.000±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YW CIL_0001YW_0002 CGP 19:6363690-6398459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0030238 IGI male sex determination
GO:0033327 IGI Leydig cell differentiation
GO:0050810 IGI regulation of steroid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227503 SF1-002 protein_coding Homo_sapiens 0 1146
ENST00000334944 SF1-001 protein_coding Homo_sapiens 0 1146
ENST00000377387 SF1-006 protein_coding Homo_sapiens 0 1144
ENST00000377390 SF1-005 protein_coding Homo_sapiens 0 1146
ENST00000377394 SF1-004 protein_coding Homo_sapiens 0 1146
ENST00000413951 SF1-011 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000432725 SF1-018 protein_coding Homo_sapiens 0 363
ENST00000433274 SF1-016 protein_coding Homo_sapiens 0 1144
ENST00000482693 SF1-012 retained_intron Homo_sapiens 0 329

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