C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: PR domain containing 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156069 Prdm16-012 ENSMUSG00000039410 10090 - 4:154328260-154334922 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonOvaryENSMUST00000156069
Transcript ID Colon Ovary
ENSMUST00000156069 4.901±0.00 3.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099V CIL_00099V_0002 VISTA 4:154093365-154697126
CIL_0007TB CIL_0007TB_0002 VISTA 4:154156294-154757167

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086053 prdm16-201 protein_coding Danio_rerio 0 281
ENSDART00000122737 prdm16-001 protein_coding Danio_rerio 0 281
ENST00000270722 PRDM16-001 protein_coding Homo_sapiens 0 518
ENST00000378389 PRDM16-005 processed_transcript Homo_sapiens 0 418
ENST00000378391 PRDM16-003 protein_coding Homo_sapiens 0 518
ENST00000509860 PRDM16-002 protein_coding Homo_sapiens 0 518
ENST00000511072 PRDM16-007 protein_coding Homo_sapiens 0 518
ENST00000512462 PRDM16-009 processed_transcript Homo_sapiens 0 518
ENST00000514189 PRDM16-008 protein_coding Homo_sapiens 0 518
ENST00000606170 PRDM16-011 retained_intron Homo_sapiens 0 261

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