C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378391 PRDM16-003 ENSG00000142611 9606 + 1:3069197-3435421 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonMuscleOvaryPlacentaENST00000378391
Transcript ID Bladder Brain Colon Muscle Ovary Placenta
ENST00000378391 0.345±0.00 0.054±0.00 0.102±0.06 0.118±0.00 0.583±0.00 0.141±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007XZ CIL_0007XZ_0001 VISTA 1:2589306-3193079
CIL_0007TB CIL_0007TB_0001 VISTA 1:2974017-3574864
CIL_00099V CIL_00099V_0001 VISTA 1:3045529-3649801

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003713 ISS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0017053 ISS transcriptional repressor complex
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 IDA negative regulation of granulocyte differentiation
GO:0043457 ISS regulation of cellular respiration
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0050873 ISS brown fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097759 Prdm16-007 protein_coding Mus_musculus 0 4277
ENSMUST00000105638 Prdm16-006 protein_coding Mus_musculus 0 4207
ENSMUST00000105637 Prdm16-002 protein_coding Mus_musculus 0 4174
ENSMUST00000141164 Prdm16-005 processed_transcript Mus_musculus 0 4169
ENSMUST00000030902 Prdm16-001 protein_coding Mus_musculus 0 4159
ENSMUST00000070313 Prdm16-003 protein_coding Mus_musculus 0 3941
ENSMUST00000105636 Prdm16-004 protein_coding Mus_musculus 0 3923
ENSMUST00000124771 Prdm16-008 protein_coding Mus_musculus 0 845
ENSMUST00000145217 Prdm16-013 processed_transcript Mus_musculus 0 617
ENSMUST00000149605 Prdm16-009 processed_transcript Mus_musculus 0 568
ENSMUST00000156069 Prdm16-012 processed_transcript Mus_musculus 0 518
ENSDART00000086053 prdm16-201 protein_coding Danio_rerio 0 510
ENSDART00000122737 prdm16-001 protein_coding Danio_rerio 0 510
ENSMUST00000131762 Prdm16-011 processed_transcript Mus_musculus 0 213

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