C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509860 PRDM16-002 ENSG00000142611 9606 + 1:3396491-3434293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaTestisENST00000509860
Transcript ID Breast Ovary Placenta Testis
ENST00000509860 0.012±0.00 0.899±0.54 0.166±0.00 0.320±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007XZ CIL_0007XZ_0001 VISTA 1:2589306-3193079
CIL_0007TB CIL_0007TB_0001 VISTA 1:2974017-3574864
CIL_00099V CIL_00099V_0001 VISTA 1:3045529-3649801

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000141164 Prdm16-005 processed_transcript Mus_musculus 0 3585
ENSMUST00000105637 Prdm16-002 protein_coding Mus_musculus 0 3585
ENSMUST00000030902 Prdm16-001 protein_coding Mus_musculus 0 3585
ENSMUST00000105638 Prdm16-006 protein_coding Mus_musculus 0 3570
ENSMUST00000097759 Prdm16-007 protein_coding Mus_musculus 0 3410
ENSMUST00000105636 Prdm16-004 protein_coding Mus_musculus 0 3175
ENSMUST00000070313 Prdm16-003 protein_coding Mus_musculus 0 3160
ENSMUST00000145217 Prdm16-013 processed_transcript Mus_musculus 0 617
ENSMUST00000156069 Prdm16-012 processed_transcript Mus_musculus 0 518
ENSDART00000086053 prdm16-201 protein_coding Danio_rerio 0 510
ENSDART00000122737 prdm16-001 protein_coding Danio_rerio 0 510
ENSMUST00000131762 Prdm16-011 processed_transcript Mus_musculus 0 213

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