C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: p21 protein (Cdc42/Rac)-activated kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156637 Pak1-002 ENSMUSG00000030774 10090 + 7:97842935-97912381 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryENSMUST00000156637
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000156637 1.780±0.40 2.389±0.36 2.798±0.27 0.134±0.05 2.181±0.77 0.178±0.06 1.574±0.52 1.489±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q0 CIL_0002Q0_0003 CGP 7:97842935-98049663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IDA protein kinase activity
GO:0004674 ISS protein serine/threonine kinase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005925 TAS focal adhesion
GO:0006468 ISS protein phosphorylation
GO:0007528 IGI neuromuscular junction development
GO:0016358 IDA dendrite development
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0043113 IGI receptor clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009560 pak1-201 protein_coding Danio_rerio 0 636
ENSDART00000101725 pak1-202 protein_coding Danio_rerio 0 623
ENSDART00000146147 pak1-001 protein_coding Danio_rerio 0 619
ENSDART00000093004 map4k3b-201 protein_coding Danio_rerio 0.00005 55
ENSDART00000157092 map4k3b-001 protein_coding Danio_rerio 0.00005 55
ENSDART00000153571 map4k3b-002 retained_intron Danio_rerio 0.00005 55
ENST00000278568 PAK1-002 protein_coding Homo_sapiens 0 1029
ENST00000356341 PAK1-001 protein_coding Homo_sapiens 0 1803
ENST00000524847 PAK1-007 protein_coding Homo_sapiens 0 479
ENST00000525542 PAK1-005 processed_transcript Homo_sapiens 0 1158
ENST00000526910 PAK1-012 retained_intron Homo_sapiens 0 420
ENST00000526968 PAK1-006 protein_coding Homo_sapiens 6e-37 158
ENST00000527457 PAK1-014 nonsense_mediated_decay Homo_sapiens 0 667
ENST00000527535 PAK1-019 nonsense_mediated_decay Homo_sapiens 0 778
ENST00000528203 PAK1-004 protein_coding Homo_sapiens 0 1029
ENST00000528592 PAK1-011 protein_coding Homo_sapiens 0 425
ENST00000528633 PAK1-010 protein_coding Homo_sapiens 0 320
ENST00000529248 PAK1-009 protein_coding Homo_sapiens 0 510
ENST00000530617 PAK1-003 protein_coding Homo_sapiens 0 1033
ENST00000532711 PAK1-020 retained_intron Homo_sapiens 0 359
ENST00000532991 PAK1-017 retained_intron Homo_sapiens 0 780
ENST00000533285 PAK1-018 protein_coding Homo_sapiens 0 1027
ENST00000533568 PAK1-008 retained_intron Homo_sapiens 0 704

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