C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoribosylglycinamide formyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156713 Gart-003 ENSMUSG00000022962 10090 - 16:91621393-91643146 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000156713
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000156713 3.899±1.09 2.285±1.21 3.925±0.07 5.702±3.54 3.047±0.82 1.347±0.04 2.215±0.69 3.493±0.72 4.426±2.80 1.795±0.35 5.632±1.54 7.333±5.85 10.006±9.40 3.820±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EH CIL_0007EH_0002 CGP 16:91614257-91646952
CIL_000466 CIL_000466_0002 CGP 16:91621186-91679221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004637 IEA phosphoribosylamine-glycine ligase activity
GO:0005524 IEA ATP binding
GO:0009113 IEA purine nucleobase biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361093 GART-004 protein_coding Homo_sapiens 0 1182
ENST00000381815 GART-003 protein_coding Homo_sapiens 0 2800
ENST00000381831 GART-001 protein_coding Homo_sapiens 0 2796
ENST00000381839 GART-006 protein_coding Homo_sapiens 0 2800
ENST00000424203 GART-002 nonsense_mediated_decay Homo_sapiens 0 2828
ENST00000426819 GART-009 protein_coding Homo_sapiens 0 630
ENST00000430874 GART-007 protein_coding Homo_sapiens 0 664
ENST00000438059 GART-008 protein_coding Homo_sapiens 0 399
ENST00000441403 GART-010 protein_coding Homo_sapiens 0 398
ENST00000460305 GART-005 processed_transcript Homo_sapiens 0 324
ENST00000467575 GART-016 retained_intron Homo_sapiens 0 512
ENST00000476524 GART-011 retained_intron Homo_sapiens 0 551

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