C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C1D nuclear receptor co-repressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156784 C1d-002 ENSMUSG00000000581 10090 + 11:17257688-17266624 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000156784
Transcript ID Adipose Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000156784 1.606±0.40 29.088±0.00 0.727±0.24 1.028±0.31 2.587±0.00 2.050±0.05 10.169±19.39 34.010±24.10 6.392±4.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I2 CIL_0008I2_0002 VISTA 11:16884831-17492556
CIL_0007JR CIL_0007JR_0004 UCNEbase 11:17198316-19679637

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355848 C1D-001 protein_coding Homo_sapiens 0 444
ENST00000407324 C1D-002 protein_coding Homo_sapiens 0 444
ENST00000409302 C1D-007 protein_coding Homo_sapiens 0 446
ENST00000410067 C1D-006 protein_coding Homo_sapiens 0 444
ENST00000418167 C1DP2-001 processed_pseudogene Homo_sapiens 0 420
ENST00000426049 C1DP1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000479484 C1D-004 retained_intron Homo_sapiens 0 285
ENST00000545067 CCDC7-204 protein_coding Homo_sapiens 0 287

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