C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156889 Pam16-003 ENSMUSG00000014301 10090 - 16:4616464-4624936 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverOvaryPlacentaTestisENSMUST00000156889
Transcript ID Brain Colon Liver Ovary Placenta Testis
ENSMUST00000156889 26.720±0.00 63.697±10.02 16.774±0.90 115.597±0.00 20.454±1.87 65.942±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WQ CIL_0000WQ_0002 CGP 16:4544661-4624924
CIL_00009U CIL_00009U_0002 CGP 16:4594713-4624988
CIL_00009Y CIL_00009Y_0002 CGP 16:4616464-4679777

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318059 PAM16-001 protein_coding Homo_sapiens 8e-32 141
ENST00000571819 PAM16-008 processed_transcript Homo_sapiens 1e-27 126
ENST00000571941 PAM16-012 protein_coding Homo_sapiens 2e-27 126
ENST00000571986 PAM16-010 nonsense_mediated_decay Homo_sapiens 3e-31 139
ENST00000572467 CORO7-PAM16-001 protein_coding Homo_sapiens 3e-27 128
ENST00000573236 PAM16-016 retained_intron Homo_sapiens 7e-28 128
ENST00000573553 PAM16-015 protein_coding Homo_sapiens 3e-27 126
ENST00000573614 PAM16-013 processed_transcript Homo_sapiens 9e-32 141
ENST00000575334 CORO7-PAM16-002 nonsense_mediated_decay Homo_sapiens 1e-26 126
ENST00000575636 PAM16-006 nonsense_mediated_decay Homo_sapiens 2e-28 130
ENST00000575848 PAM16-014 protein_coding Homo_sapiens 1e-28 130
ENST00000576217 PAM16-002 protein_coding Homo_sapiens 6e-32 141
ENST00000577031 PAM16-005 protein_coding Homo_sapiens 7e-32 141
ENST00000616009 CORO7-PAM16-202 protein_coding Homo_sapiens 8e-32 141
ENST00000617295 CORO7-PAM16-204 protein_coding Homo_sapiens 4e-27 128

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