C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: presequence translocase-associated motor 16 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000576217 PAM16-002 ENSG00000217930 9606 - 16:4340251-4355607 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartLiverMuscleOvaryPlacentaTestisENST00000576217
Transcript ID Adipose Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000576217 10.403±0.00 9.807±0.00 10.561±0.00 16.814±0.00 11.945±8.46 31.296±0.00 29.305±5.77 32.361±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WQ CIL_0000WQ_0001 CGP 16:4257186-4339597
CIL_00009U CIL_00009U_0001 CGP 16:4314761-4355607
CIL_00009Y CIL_00009Y_0001 CGP 16:4331549-4420494

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005744 IEA mitochondrial inner membrane presequence translocase complex
GO:0006626 TAS protein targeting to mitochondrion
GO:0030150 IEA protein import into mitochondrial matrix
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057649 Gm9803-201 protein_coding Mus_musculus 0 514
ENSMUST00000014445 Pam16-001 protein_coding Mus_musculus 0 514
ENSMUST00000139534 Pam16-002 retained_intron Mus_musculus 0 411
ENSMUST00000156889 Pam16-003 nonsense_mediated_decay Mus_musculus 6e-32 141

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