C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebral cavernous malformation 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159007 Ccm2-005 ENSMUSG00000000378 10090 + 11:6546910-6589474 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SD CIL_0000SD_0002 CGP 11:6506548-6596744
CIL_0000S8 CIL_0000S8_0002 CGP 11:6546887-6606053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0001570 IGI vasculogenesis
GO:0001701 IGI in utero embryonic development
GO:0001885 IGI endothelial cell development
GO:0001944 IGI vasculature development
GO:0005515 IPI protein binding
GO:0007507 IGI heart development
GO:0035264 IGI multicellular organism growth
GO:0043234 IDA protein complex
GO:0045216 IMP cell-cell junction organization
GO:0048839 IDA inner ear development
GO:0048845 IGI venous blood vessel morphogenesis
GO:0060039 IGI pericardium development
GO:0060837 IMP blood vessel endothelial cell differentiation
GO:0061154 ISO endothelial tube morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258781 CCM2-001 protein_coding Homo_sapiens 0 420
ENST00000381112 CCM2-201 protein_coding Homo_sapiens 0 420
ENST00000461377 CCM2-003 processed_transcript Homo_sapiens 0 420
ENST00000472223 CCM2-007 processed_transcript Homo_sapiens 0 420
ENST00000474617 CCM2-016 protein_coding Homo_sapiens 0 357
ENST00000475551 CCM2-002 protein_coding Homo_sapiens 0 420
ENST00000476594 CCM2-013 processed_transcript Homo_sapiens 0 311
ENST00000478582 CCM2-012 processed_transcript Homo_sapiens 0 357
ENST00000481194 CCM2-004 retained_intron Homo_sapiens 0.00000004 66
ENST00000482714 CCM2-006 processed_transcript Homo_sapiens 0 418
ENST00000488727 CCM2-010 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000492883 CCM2-009 retained_intron Homo_sapiens 0 250
ENST00000541586 CCM2-202 protein_coding Homo_sapiens 0 544
ENST00000544363 CCM2-203 protein_coding Homo_sapiens 0 357

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