C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebral cavernous malformation 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488727 CCM2-010 ENSG00000136280 9606 + 7:45000249-45076414 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000488727
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000488727 5.261±0.00 7.801±0.00 10.260±0.00 12.509±0.00 10.499±0.00 3.131±0.00 9.847±0.00 10.366±0.00 11.644±0.00 1.954±0.00 2.075±0.00 4.716±0.00 13.220±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SD CIL_0000SD_0001 CGP 7:44962662-45076469
CIL_0000S8 CIL_0000S8_0001 CGP 7:44999475-45088914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000388 Ccm2-001 protein_coding Mus_musculus 0 1066
ENSMUST00000160633 Ccm2-006 protein_coding Mus_musculus 0 961
ENSMUST00000109721 Ccm2-201 protein_coding Mus_musculus 0 701
ENSMUST00000109722 Ccm2-002 protein_coding Mus_musculus 0 701
ENSMUST00000159007 Ccm2-005 protein_coding Mus_musculus 0 420
ENSMUST00000161501 Ccm2-004 nonsense_mediated_decay Mus_musculus 0 292
ENSMUST00000161667 Ccm2-007 retained_intron Mus_musculus 0 268

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