C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebral cavernous malformation 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541586 CCM2-202 ENSG00000136280 9606 + 7:45000188-45076469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000541586
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000541586 10.151±0.00 19.841±0.00 6.645±0.00 18.769±0.00 9.399±0.00 8.569±0.00 25.479±0.00 16.175±0.00 11.007±4.75 13.241±0.71 11.940±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SD CIL_0000SD_0001 CGP 7:44962662-45076469
CIL_0000S8 CIL_0000S8_0001 CGP 7:44999475-45088914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001570 IMP vasculogenesis
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0007229 TAS integrin-mediated signaling pathway
GO:0051403 TAS stress-activated MAPK cascade
GO:0061154 IMP endothelial tube morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000388 Ccm2-001 protein_coding Mus_musculus 0 1406
ENSMUST00000109721 Ccm2-201 protein_coding Mus_musculus 0 1399
ENSMUST00000109722 Ccm2-002 protein_coding Mus_musculus 0 1384
ENSMUST00000160633 Ccm2-006 protein_coding Mus_musculus 0 682
ENSMUST00000159007 Ccm2-005 protein_coding Mus_musculus 0 544
ENSMUST00000161667 Ccm2-007 retained_intron Mus_musculus 0 268
ENSMUST00000161501 Ccm2-004 nonsense_mediated_decay Mus_musculus 0 250

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