C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000SD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136286-ENSG00000136280 CGP 9606 7:44962662-45076469
GeneTranscriptPositionBiotype
ENSG00000136280 (CCM2)
cerebral cavernous malformation 2 		ENST00000258781 (CCM2-001) 45000185-45076467 protein_coding
ENST00000381112 (CCM2-201) 45027634-45076469 protein_coding
ENST00000461377 (CCM2-003) 44999475-45076352 processed_transcript
ENST00000470837 (CCM2-015) 45072338-45073562 retained_intron
ENST00000472223 (CCM2-007) 45027701-45070557 processed_transcript
ENST00000474617 (CCM2-016) 45027672-45076431 protein_coding
ENST00000475551 (CCM2-002) 45027026-45076451 protein_coding
ENST00000476594 (CCM2-013) 45038261-45064622 processed_transcript
ENST00000477605 (CCM2-005) 45067636-45076437 retained_intron
ENST00000478169 (CCM2-011) 45027015-45064494 processed_transcript
ENST00000478582 (CCM2-012) 45000189-45073519 processed_transcript
ENST00000480382 (CCM2-014) 45068494-45072786 protein_coding
ENST00000480658 (CCM2-008) 45027672-45073288 retained_intron
ENST00000481194 (CCM2-004) 45064603-45076453 retained_intron
ENST00000482714 (CCM2-006) 45027672-45071180 processed_transcript
ENST00000488727 (CCM2-010) 45000249-45076414 nonsense_mediated_decay
ENST00000492883 (CCM2-009) 45027672-45073166 retained_intron
ENST00000541586 (CCM2-202) 45000188-45076469 protein_coding
ENST00000544363 (CCM2-203) 45000188-45076469 protein_coding
ENSG00000136286 (MYO1G)
myosin IG 		ENST00000258787 (MYO1G-001) 44962666-44979098 protein_coding
ENST00000463516 (MYO1G-004) 44962666-44975215 retained_intron
ENST00000464434 (MYO1G-002) 44968523-44979088 nonsense_mediated_decay
ENST00000480503 (MYO1G-005) 44968523-44979000 retained_intron
ENST00000483585 (MYO1G-003) 44962662-44979079 retained_intron
ENST00000488554 (MYO1G-006) 44962666-44975106 retained_intron
ENST00000495831 (MYO1G-007) 44962662-44979069 nonsense_mediated_decay
ENSG00000232956 (SNHG15)
small nucleolar RNA host gene 15 (non-protein coding) 		ENST00000438705 (SNHG15-009) 44983085-44986570 lincRNA
ENST00000577700 (SNHG15-002) 44983023-44986637 lincRNA
ENST00000578968 (SNHG15-001) 44983023-44986834 lincRNA
ENST00000579383 (SNHG15-007) 44983026-44986656 lincRNA
ENST00000580458 (SNHG15-008) 44983034-44986650 lincRNA
ENST00000580528 (SNHG15-003) 44985462-44986961 lincRNA
ENST00000582727 (SNHG15-006) 44983615-44986674 lincRNA
ENST00000584327 (SNHG15-010) 44983137-44986560 lincRNA
ENST00000584686 (SNHG15-005) 44983847-44986668 lincRNA
ENST00000585030 (SNHG15-004) 44983026-44986669 lincRNA
ENSG00000277184 (SNORA9)
small nucleolar RNA, H/ACA box 9 		ENST00000384215 (SNORA9-201) 44985378-44985510 snoRNA
CIL_0000SD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020437-ENSMUSG00000000378 CGP 10090 11:6506548-6596744
GeneTranscriptPositionBiotype
ENSMUSG00000000378 (Ccm2)
cerebral cavernous malformation 2 		ENSMUST00000000388 (Ccm2-001) 6546887-6596744 protein_coding
ENSMUST00000109721 (Ccm2-201) 6561230-6596742 protein_coding
ENSMUST00000109722 (Ccm2-002) 6560183-6596734 protein_coding
ENSMUST00000144293 (Ccm2-003) 6561121-6562952 processed_transcript
ENSMUST00000159007 (Ccm2-005) 6546910-6589474 protein_coding
ENSMUST00000160633 (Ccm2-006) 6561134-6593070 protein_coding
ENSMUST00000161501 (Ccm2-004) 6561112-6593133 nonsense_mediated_decay
ENSMUST00000161667 (Ccm2-007) 6593048-6594269 retained_intron
ENSMUSG00000020437 (Myo1g)
myosin IG 		ENSMUST00000003459 (Myo1g-001) 6506548-6520958 protein_coding
ENSMUST00000131823 (Myo1g-006) 6514503-6515500 retained_intron
ENSMUST00000134489 (Myo1g-003) 6519047-6519504 protein_coding
ENSMUST00000134639 (Myo1g-007) 6507869-6508685 retained_intron
ENSMUST00000144725 (Myo1g-002) 6506674-6520897 nonsense_mediated_decay
ENSMUST00000146536 (Myo1g-005) 6517998-6520965 nonsense_mediated_decay
ENSMUST00000156878 (Myo1g-004) 6512964-6520958 retained_intron
ENSMUSG00000084231 (Gm11975)
predicted gene 11975 		ENSMUST00000118772 (Gm11975-001) 6559023-6559503 processed_pseudogene
ENSMUSG00000085156 (Gm11974)
predicted gene 11974 		ENSMUST00000124818 (Gm11974-004) 6525625-6528441 processed_transcript
ENSMUST00000129570 (Gm11974-002) 6525592-6526730 processed_transcript
ENSMUST00000134527 (Gm11974-001) 6527899-6528746 processed_transcript
ENSMUST00000147762 (Gm11974-003) 6525591-6528760 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SD_0001ENSG00000136280ENST00000258781ENST00000381112ENST00000461377ENST00000470837ENST00000474617ENST00000475551ENST00000477605ENST00000481194ENST00000488727ENST00000541586ENSG00000136286ENST00000258787ENST00000463516ENST00000464434ENST00000480503ENST00000483585ENST00000488554ENST00000495831ENSG00000232956ENST00000438705ENST00000577700ENST00000578968ENST00000579383ENST00000580458ENST00000580528ENST00000582727ENST00000584327ENST00000584686ENST00000585030ENSG00000277184ENST00000384215CIL_0000SD_0002ENSMUSG00000000378ENSMUST00000000388ENSMUST00000109721ENSMUST00000160633ENSMUSG00000020437ENSMUST00000003459ENSMUST00000131823ENSMUST00000144725ENSMUST00000146536ENSMUST00000156878ENSMUSG00000084231ENSMUST00000118772ENSMUSG00000085156ENSMUST00000124818ENSMUST00000129570ENSMUST00000134527ENSMUST00000147762
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136280 ENST00000258781 N/A N/A 0.141±0.00 2.510±0.00 N/A N/A 4.604±0.00 1.934±0.00 3.413±2.91 N/A 16.281±0.00 15.016±6.01 16.493±9.97 31.937±0.00
ENST00000381112 N/A N/A N/A N/A N/A 0.729±0.00 N/A N/A 0.389±0.00 N/A N/A N/A N/A N/A
ENST00000461377 N/A N/A 0.153±0.00 1.656±0.00 1.311±0.00 N/A 1.998±0.00 N/A N/A 1.297±0.00 N/A N/A N/A 3.912±0.00
ENST00000470837 N/A N/A N/A N/A N/A N/A N/A 2.255±0.00 N/A N/A N/A N/A N/A N/A
ENST00000472223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474617 N/A N/A N/A N/A N/A N/A N/A N/A 0.547±0.00 N/A 4.173±0.00 N/A N/A N/A
ENST00000475551 N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A 0.416±0.00 N/A 0.929±0.00 N/A N/A N/A
ENST00000476594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477605 N/A N/A N/A N/A N/A 0.459±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481194 N/A 1.902±0.00 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488727 5.261±0.00 7.801±0.00 N/A 10.260±0.00 12.509±0.00 10.499±0.00 3.131±0.00 9.847±0.00 10.366±0.00 11.644±0.00 1.954±0.00 2.075±0.00 4.716±0.00 13.220±0.00
ENST00000492883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541586 10.151±0.00 19.841±0.00 N/A 6.645±0.00 18.769±0.00 9.399±0.00 N/A 8.569±0.00 25.479±0.00 16.175±0.00 N/A 11.007±4.75 13.241±0.71 11.940±0.00
ENST00000544363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136286 ENST00000258787 1.366±0.00 9.811±0.00 N/A 2.807±0.00 N/A N/A N/A 0.364±0.00 0.272±0.00 6.430±5.83 N/A 0.898±0.47 1.426±0.49 0.213±0.00
ENST00000463516 N/A 2.982±0.00 N/A N/A N/A N/A N/A 0.043±0.00 N/A 1.974±0.00 N/A 0.355±0.06 N/A N/A
ENST00000464434 N/A N/A 0.040±0.00 0.404±0.00 0.261±0.09 N/A 0.049±0.00 0.081±0.00 0.041±0.00 N/A 0.026±0.00 N/A N/A 0.216±0.09
ENST00000480503 N/A N/A N/A N/A 0.221±0.00 N/A 0.009±0.00 N/A N/A 0.583±0.00 N/A N/A N/A N/A
ENST00000483585 N/A N/A N/A 0.045±0.00 N/A 0.086±0.00 N/A N/A N/A 0.858±0.00 N/A N/A N/A N/A
ENST00000488554 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A
ENST00000495831 1.057±0.00 7.352±0.00 N/A N/A 0.989±0.00 0.197±0.00 0.125±0.04 0.395±0.00 0.152±0.07 N/A 0.159±0.00 0.271±0.10 1.079±0.03 0.303±0.00
ENSG00000232956 ENST00000438705 N/A N/A 0.286±0.00 0.823±0.00 N/A N/A N/A 0.559±0.00 N/A N/A N/A N/A 1.804±0.00 7.593±0.00
ENST00000577700 N/A N/A 0.100±0.00 N/A 0.639±0.00 N/A N/A 0.152±0.00 0.515±0.00 0.646±0.00 N/A 1.134±0.46 0.603±0.00 0.757±0.53
ENST00000578968 0.583±0.00 8.990±0.00 N/A 4.127±0.00 3.085±0.00 3.749±0.00 1.110±0.00 1.444±0.00 1.635±0.00 9.147±0.00 0.423±0.00 9.733±6.93 3.117±1.72 5.156±1.09
ENST00000579383 1.378±0.00 13.374±0.00 0.255±0.00 5.131±0.00 1.932±0.00 N/A N/A 4.161±0.00 0.864±0.00 9.141±0.00 0.969±0.00 N/A N/A N/A
ENST00000580458 1.774±0.00 N/A N/A 2.592±1.20 N/A 1.509±0.00 N/A N/A N/A N/A N/A 13.780±6.62 3.282±1.14 3.987±0.00
ENST00000580528 N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A 0.187±0.00 N/A N/A N/A
ENST00000582727 N/A N/A N/A N/A N/A 0.621±0.00 0.339±0.00 0.965±0.00 0.566±0.00 N/A N/A N/A N/A 1.016±0.00
ENST00000584327 N/A N/A N/A 1.426±0.00 N/A N/A 0.651±0.00 3.619±0.00 N/A N/A N/A N/A N/A N/A
ENST00000584686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.767±0.00 N/A N/A N/A
ENST00000585030 N/A N/A N/A N/A N/A N/A N/A N/A 0.796±0.00 N/A N/A N/A N/A N/A
ENSG00000277184 ENST00000384215 N/A N/A N/A 33.940±0.00 31.461±0.00 N/A 32.745±0.00 69.004±0.00 63.251±0.00 125.133±0.00 70.599±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000378 ENSMUST00000000388 9.037±3.11 N/A 27.111±2.41 17.806±5.34 7.635±1.38 4.193±0.35 7.326±0.72 6.901±2.90 12.445±9.46 5.557±0.73 6.939±1.33 10.980±4.03 29.060±10.02 3.322±1.17
ENSMUST00000109721 29.763±6.10 22.375±0.86 N/A 10.688±6.73 46.049±24.73 30.070±2.06 7.310±3.05 11.453±4.59 12.792±2.25 28.145±0.47 3.392±0.64 37.616±15.08 16.783±4.16 2.183±1.71
ENSMUST00000109722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160633 N/A N/A N/A N/A N/A N/A N/A N/A 5.018±0.00 N/A N/A 7.254±0.00 14.289±0.00 N/A
ENSMUST00000161501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020437 ENSMUST00000003459 5.437±0.29 1.456±0.25 4.019±0.47 0.168±0.01 24.959±12.44 2.872±0.83 1.264±0.69 2.174±1.10 3.464±3.22 12.014±1.80 0.278±0.25 1.885±0.71 2.570±2.17 0.066±0.05
ENSMUST00000131823 N/A N/A N/A N/A N/A N/A N/A N/A 0.438±0.00 N/A N/A N/A N/A N/A
ENSMUST00000134489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144725 N/A 0.465±0.00 N/A 0.133±0.00 10.299±3.25 1.380±0.33 N/A N/A 0.393±0.08 N/A 0.070±0.00 0.582±0.16 0.916±0.07 0.118±0.09
ENSMUST00000146536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A N/A 0.217±0.00
ENSMUST00000156878 0.687±0.03 N/A 0.387±0.04 0.008±0.00 2.450±0.00 N/A 0.064±0.00 0.241±0.13 N/A 1.823±0.00 0.091±0.10 0.208±0.09 0.625±0.00 0.026±0.00
ENSMUSG00000084231 ENSMUST00000118772 0.762±0.32 0.292±0.00 0.141±0.01 0.329±0.11 0.752±0.24 0.425±0.14 0.296±0.14 0.195±0.09 0.148±0.10 0.328±0.04 N/A 0.594±0.13 0.308±0.09 0.109±0.01
ENSMUSG00000085156 ENSMUST00000124818 N/A N/A N/A 0.857±0.00 1.375±0.00 N/A N/A N/A N/A N/A 0.720±0.00 6.675±2.53 3.976±2.72 0.552±0.00
ENSMUST00000129570 1.385±0.89 N/A 5.492±0.00 0.412±0.00 2.336±0.63 N/A 0.421±0.28 N/A 6.023±0.99 N/A 0.410±0.18 3.870±0.75 2.168±0.34 0.309±0.00
ENSMUST00000134527 2.671±1.46 2.031±0.56 2.788±0.00 0.367±0.00 3.490±1.24 2.752±0.98 0.464±0.24 0.927±0.38 2.782±1.47 2.630±0.87 0.542±0.17 3.092±0.48 1.611±0.72 0.485±0.07
ENSMUST00000147762 4.505±2.72 6.627±1.43 10.168±3.72 2.091±1.34 10.015±3.50 11.963±2.18 1.482±0.64 2.817±0.56 8.705±6.35 4.433±1.17 1.138±0.48 18.531±5.80 5.877±2.18 2.956±0.61

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