C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPHK1 interactor, AKAP domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159078 Sphkap-002 ENSMUSG00000026163 10090 - 1:83255442-83279165 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159078
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159078 0.232±0.17 0.010±0.00 2.635±1.42 0.018±0.00 0.078±0.02 0.153±0.01 0.017±0.01 0.008±0.00 0.097±0.00 0.045±0.02 0.084±0.06 0.030±0.02 4.798±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AJ CIL_0004AJ_0003 CGP 1:83159752-83408200
CIL_0004AK CIL_0004AK_0003 CGP 1:83254139-84364180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0030018 IDA Z disc
GO:0051018 IPI protein kinase A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344657 SPHKAP-001 protein_coding Homo_sapiens 0 1650
ENST00000392056 SPHKAP-002 protein_coding Homo_sapiens 0 2298
ENST00000490603 SPHKAP-003 retained_intron Homo_sapiens 0 604

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