C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004AK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017429-ENSDARG00000040315 CGP 7955 18:44804362-45093325
GeneTranscriptPositionBiotype
ENSDARG00000017429 (sphkap)
SPHK1 interactor, AKAP domain containing 		ENSDART00000040669 (sphkap-001) 44804362-44872954 protein_coding
ENSDARG00000040315 (pid1)
phosphotyrosine interaction domain containing 1 		ENSDART00000122194 (pid1-201) 45037508-45093325 protein_coding
ENSDARG00000082074 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000118064 (5S_rRNA.173-201) 44985474-44985592 rRNA
CIL_0004AK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153820-ENSG00000153823 CGP 9606 2:227979950-229271285
GeneTranscriptPositionBiotype
ENSG00000153820 (SPHKAP)
SPHK1 interactor, AKAP domain containing 		ENST00000344657 (SPHKAP-001) 227979957-228181626 protein_coding
ENST00000392056 (SPHKAP-002) 227979950-228181645 protein_coding
ENST00000490603 (SPHKAP-003) 227990908-227995635 retained_intron
ENSG00000153823 (PID1)
phosphotyrosine interaction domain containing 1 		ENST00000354069 (PID1-005) 229025577-229232085 protein_coding
ENST00000392054 (PID1-004) 229023974-229271265 protein_coding
ENST00000392055 (PID1-001) 229023995-229271285 protein_coding
ENST00000409462 (PID1-002) 229023989-229271280 protein_coding
ENST00000482518 (PID1-003) 228850526-229245060 processed_transcript
ENST00000534952 (PID1-006) 229026036-229271239 nonsense_mediated_decay
ENSG00000203387 (AC074019.2)
 ENST00000428788 (AC074019.2-001) 228352120-228353215 processed_pseudogene
ENSG00000232023 (AC009410.1)
 ENST00000432481 (AC009410.1-001) 228483261-228611395 lincRNA
ENSG00000237322 (RPL7L1P10)
ribosomal protein L7-like 1 pseudogene 10 		ENST00000427790 (RPL7L1P10-001) 228753324-228753786 processed_pseudogene
ENSG00000253006 (RN7SKP283)
RNA, 7SK small nuclear pseudogene 283 		ENST00000517197 (RN7SKP283-201) 229236340-229236609 misc_RNA
CIL_0004AK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026163-ENSMUSG00000045658 CGP 10090 1:83254139-84364180
GeneTranscriptPositionBiotype
ENSMUSG00000026163 (Sphkap)
SPHK1 interactor, AKAP domain containing 		ENSMUST00000053075 (Sphkap-003) 83265127-83408165 retained_intron
ENSMUST00000159078 (Sphkap-002) 83255442-83279165 protein_coding
ENSMUST00000160237 (Sphkap-005) 83339146-83408139 retained_intron
ENSMUST00000160567 (Sphkap-004) 83384843-83408165 retained_intron
ENSMUST00000160953 (Sphkap-001) 83254139-83408200 protein_coding
ENSMUSG00000045658 (Pid1)
phosphotyrosine interaction domain containing 1 		ENSMUST00000168574 (Pid1-001) 84036296-84284645 protein_coding
ENSMUST00000175948 (Pid1-007) 84037926-84053253 processed_transcript
ENSMUST00000175996 (Pid1-006) 84107794-84364180 protein_coding
ENSMUST00000176559 (Pid1-004) 84037231-84336173 protein_coding
ENSMUST00000176720 (Pid1-005) 84080579-84284423 protein_coding
ENSMUST00000176822 (Pid1-003) 84115332-84341110 protein_coding
ENSMUST00000177458 (Pid1-002) 84157129-84284611 protein_coding
ENSMUST00000187992 (Pid1-008) 84283193-84284623 retained_intron
ENSMUSG00000079140 (Gm6374)
predicted gene 6374 		ENSMUST00000159051 (Gm6374-001) 83314513-83315300 processed_pseudogene
ENSMUSG00000094946 (Gm25754)
predicted gene, 25754 		ENSMUST00000178653 (Gm25754-201) 83795912-83796032 miRNA
ENSMUSG00000098851 (Mir6353)
microRNA 6353 		ENSMUST00000183596 (Mir6353-201) 84218849-84218961 miRNA
ENSMUSG00000100580 (RP23-118K4.1)
RIKEN cDNA 4933436I20 gene 		ENSMUST00000189405 (RP23-118K4.1-001) 83659550-83911571 lincRNA
ENSMUST00000190615 (RP23-118K4.1-002) 83843602-83911644 lincRNA
ENSMUSG00000101934 (RP23-237M24.1)
predicted gene, 18304 		ENSMUST00000189162 (RP23-237M24.1-001) 84168188-84168733 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AK_0001ENSDARG00000017429ENSDART00000040669ENSDARG00000040315ENSDART00000122194ENSDARG00000082074ENSDART00000118064CIL_0004AK_0002ENSG00000153820ENST00000344657ENST00000392056ENST00000490603ENSG00000153823ENST00000354069ENST00000392054ENST00000392055ENST00000409462ENST00000482518ENST00000534952ENSG00000203387ENST00000428788ENSG00000232023ENST00000432481ENSG00000237322ENST00000427790ENSG00000253006ENST00000517197CIL_0004AK_0003ENSMUSG00000026163ENSMUST00000053075ENSMUST00000159078ENSMUST00000160237ENSMUST00000160567ENSMUST00000160953ENSMUSG00000045658ENSMUST00000168574ENSMUST00000175948ENSMUST00000175996ENSMUST00000176559ENSMUST00000176720ENSMUST00000176822ENSMUST00000177458ENSMUST00000187992ENSMUSG00000079140ENSMUST00000159051ENSMUSG00000094946ENSMUST00000178653ENSMUSG00000098851ENSMUST00000183596ENSMUSG00000100580ENSMUST00000189405ENSMUST00000190615ENSMUSG00000101934ENSMUST00000189162
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AK_0001ENSDARG00000017429ENSDART00000040669ENSDARG00000040315ENSDART00000122194ENSDARG00000082074ENSDART00000118064CIL_0004AK_0002ENSG00000153820ENST00000344657ENST00000392056ENST00000490603ENSG00000153823ENST00000354069ENST00000392054ENST00000392055ENST00000409462ENSG00000203387ENST00000428788ENSG00000232023ENST00000432481ENSG00000237322ENST00000427790ENSG00000253006ENST00000517197CIL_0004AK_0003ENSMUSG00000026163ENSMUST00000053075ENSMUST00000159078ENSMUST00000160237ENSMUST00000160567ENSMUST00000160953ENSMUSG00000045658ENSMUST00000168574ENSMUST00000175948ENSMUST00000175996ENSMUST00000176559ENSMUST00000187992ENSMUSG00000079140ENSMUST00000159051ENSMUSG00000094946ENSMUST00000178653ENSMUSG00000098851ENSMUST00000183596ENSMUSG00000100580ENSMUST00000189405ENSMUST00000190615ENSMUSG00000101934ENSMUST00000189162
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017429 ENSDART00000040669 N/A N/A N/A 3.660±0.44 N/A N/A 0.667±0.00 0.109±0.00 0.029±0.00 N/A 0.643±0.00 N/A N/A N/A
ENSDARG00000040315 ENSDART00000122194 N/A N/A N/A 12.706±6.15 N/A N/A 1.619±0.82 1.289±0.21 0.489±0.00 N/A 2.318±0.00 N/A N/A N/A
ENSDARG00000082074 ENSDART00000118064 N/A N/A N/A N/A N/A N/A 1.793±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153820 ENST00000344657 N/A N/A 0.013±0.00 3.172±0.49 0.027±0.02 0.080±0.04 11.900±7.70 0.017±0.00 0.013±0.01 0.134±0.00 0.005±0.00 1.042±0.31 0.055±0.00 0.066±0.03
ENST00000392056 N/A 0.128±0.00 N/A 1.103±0.52 0.136±0.00 N/A 3.081±0.00 0.048±0.00 N/A N/A N/A 0.376±0.00 N/A 0.034±0.00
ENST00000490603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.158±0.00
ENSG00000153823 ENST00000354069 N/A N/A N/A N/A N/A 4.555±0.00 N/A 5.805±0.00 N/A 5.379±0.00 N/A 1.348±0.00 6.044±0.00 1.923±0.00
ENST00000392054 N/A 0.796±0.00 0.130±0.00 N/A N/A N/A N/A 1.366±0.00 N/A N/A 0.502±0.00 N/A N/A N/A
ENST00000392055 6.330±0.00 3.744±0.00 0.093±0.00 3.109±1.05 2.989±1.58 18.047±0.00 2.121±1.76 2.732±0.09 18.600±14.88 3.670±2.10 3.463±0.00 7.159±4.87 12.003±3.00 3.753±2.44
ENST00000409462 4.476±0.00 1.983±0.00 0.552±0.00 4.392±0.49 5.297±0.00 21.145±0.00 1.177±0.43 1.761±0.04 1.316±0.00 N/A 0.383±0.00 2.370±1.28 2.492±0.00 6.330±0.00
ENST00000482518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000203387 ENST00000428788 0.267±0.00 0.779±0.00 N/A 0.109±0.09 0.248±0.00 0.043±0.00 0.110±0.00 0.215±0.00 0.094±0.00 0.275±0.00 0.117±0.00 0.051±0.02 N/A 0.130±0.02
ENSG00000232023 ENST00000432481 N/A N/A N/A N/A 0.014±0.00 0.026±0.00 0.040±0.00 N/A 0.037±0.00 0.047±0.00 0.038±0.00 0.355±0.00 0.134±0.01 0.066±0.00
ENSG00000237322 ENST00000427790 N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253006 ENST00000517197 N/A N/A N/A N/A N/A N/A N/A N/A 1.753±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026163 ENSMUST00000053075 0.085±0.00 N/A N/A 5.966±0.00 0.014±0.00 0.084±0.04 0.153±0.06 N/A 0.002±0.00 0.111±0.00 0.016±0.00 0.010±0.00 0.012±0.00 0.741±0.00
ENSMUST00000159078 0.232±0.17 N/A 0.010±0.00 2.635±1.42 0.018±0.00 0.078±0.02 0.153±0.01 0.017±0.01 0.008±0.00 0.097±0.00 0.045±0.02 0.084±0.06 0.030±0.02 4.798±2.27
ENSMUST00000160237 N/A N/A N/A N/A N/A 0.095±0.00 N/A 0.168±0.00 N/A 0.655±0.00 N/A 0.301±0.02 N/A N/A
ENSMUST00000160567 N/A N/A N/A N/A N/A 0.505±0.20 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160953 0.016±0.00 0.591±0.14 N/A 1.301±0.00 N/A 0.021±0.00 N/A 0.016±0.00 0.007±0.00 0.125±0.02 0.020±0.00 0.084±0.06 N/A N/A
ENSMUSG00000045658 ENSMUST00000168574 10.814±0.75 6.385±1.16 28.084±0.97 8.445±1.64 9.262±2.15 6.051±0.84 2.482±0.78 3.166±0.58 21.765±15.74 16.135±2.43 1.074±0.16 15.350±6.65 3.213±1.82 0.540±0.27
ENSMUST00000175948 N/A N/A N/A N/A 4.772±0.00 N/A 2.233±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00
ENSMUST00000176559 7.258±1.64 N/A 6.735±0.00 4.029±1.33 3.466±0.31 N/A 1.028±0.23 1.230±0.39 1.295±0.00 5.386±0.91 N/A N/A 1.777±0.45 0.266±0.13
ENSMUST00000176720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187992 N/A 14.567±2.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.447±0.00 N/A N/A
ENSMUSG00000079140 ENSMUST00000159051 N/A N/A N/A 0.056±0.03 N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A 0.007±0.00 0.183±0.17
ENSMUSG00000094946 ENSMUST00000178653 N/A N/A 23.001±16.90 5.900±2.63 N/A N/A N/A N/A 12.750±5.12 N/A N/A N/A N/A N/A
ENSMUSG00000098851 ENSMUST00000183596 N/A N/A N/A N/A N/A N/A N/A N/A 19.049±0.00 N/A N/A N/A N/A 46.597±0.00
ENSMUSG00000100580 ENSMUST00000189405 0.038±0.00 0.084±0.00 N/A N/A 0.090±0.03 N/A 0.023±0.00 0.072±0.03 0.015±0.01 N/A N/A N/A N/A 0.650±0.14
ENSMUST00000190615 N/A N/A 0.048±0.00 0.330±0.31 N/A 0.118±0.00 0.057±0.03 0.053±0.03 0.019±0.01 0.033±0.00 N/A 0.221±0.14 0.165±0.21 0.314±0.00
ENSMUSG00000101934 ENSMUST00000189162 0.093±0.00 N/A 0.123±0.00 0.115±0.00 N/A N/A 0.262±0.00 N/A 0.141±0.16 0.110±0.00 N/A 0.235±0.17 N/A N/A

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