C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159483 Stag3-003 ENSMUSG00000036928 10090 + 5:138280526-138312390 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000159483
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000159483 0.150±0.11 0.251±0.13 1.543±0.07 0.045±0.01 0.035±0.00 0.043±0.00 0.212±0.08 0.062±0.02 0.018±0.00 0.273±0.14 2.481±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005CH CIL_0005CH_0002 CGP 5:138264952-138312393

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317296 STAG3-001 protein_coding Homo_sapiens 0 1262
ENST00000369872 SYPL2-001 protein_coding Homo_sapiens 0.0003 53
ENST00000394018 STAG3-003 protein_coding Homo_sapiens 0 1262
ENST00000426455 STAG3-004 protein_coding Homo_sapiens 0 1262
ENST00000440830 STAG3-006 processed_transcript Homo_sapiens 0 1262
ENST00000477469 STAG3-016 retained_intron Homo_sapiens 0 318
ENST00000491498 STAG3-020 processed_transcript Homo_sapiens 0 1262
ENST00000496157 STAG3-002 retained_intron Homo_sapiens 0 505
ENST00000615138 STAG3-201 protein_coding Homo_sapiens 0 1275
ENST00000620100 STAG3-202 protein_coding Homo_sapiens 0 1262

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